SNP Profiles of PA150 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
CTAGGGCCTTACTTTTCCAAGGCCAGCC
1._PA_150_[PER]
CTAGGGCCTTACTTTTCCAAGGCCAGCC
2._PA_150_[PER]
CTAGGGCCTTACTTTTCCAAGGCCAGCC
3._PA_150_[PER]
CTAGGGCCTTACTTTTCCAAGGCCAGCC
4._RUQ_1731
__GG____TT__GG_AG_
5._GC-01-034-2-11
CTGGGGCCTTACCTTTCCAAAGCCAGCT
6._GC-01-034-2-11
CTGGGGCCTTACCTTTCCAAAGCCAGCT
7._PA_150_[PER]
CTGGGGCCTTACCTTTCCAAAGCCAGCT
8._PA_150_[PER]
CTGGGGCCTTACCTTTCCAAAGCCAGCT
9._PA_150_[PER]
CTGGGGCCTTACCTTTCCAAAGCCAGCT
10._PA_150_[PER]
CTGGGGCCTTACCTTTCCAAAGCCAGCT
11._GC-01-034-2-11
CTGGGGCCTTACCTTTCCAAAGCCAGCT
12._GC-01-034-2-11
CTGGGGCCTTACCTTTCCAAAGCCAGCT
13._PA_150_[PER]
CTAGCGCTCTACCCGTCTATAGCTAGCT
14._GC-01-034-2-11
CTAGCGCTCTACCCGTCTATAGCTAGCT
15._PA_150_[PER]
TTAACGTTCTACCTTTCCAAGGTTGGCT
16._GC-01-034-2-11
TTAACGTTCTACCTTTCCAAGGTTGGCT
17._PA_150_[PER]
TTAACGTTCTACCTTTCCAAGGTTGGCT
18._PA_150_[PER]
TTAACGTTCTACCTTTCCAAGGTTGGCT
19._PA_150_[PER]
TTAACGTTCTACCTTTCCAAGGTTGGCT
20._PA_150_[PER]
TTAACGTTCTACCTTTCCAAGGTTGGCT
21._GC-01-034-2-11
TTAACGTTCTACCTTTCCAAGGTTGGCT
22._GC-01-034-2-11
TTAACGTTCTACCTTTCCAAGGTTGGCT
23._GC-01-034-2-11
TTAACGTTCTACCTTTCCAAGGTTGGCT
24._GC-01-034-2-11
TTAACGTTCTACCTTTCCAAGGTTGGCT
25._PA_150_[PER]
CCAACCTTTTAATTTTCCAAGGCTAGCT
26._PA_150_[PER]
_AGCGTT_CCTTGTCC_GGCTAACT
27._PA_150_[PER]_Fld#_173_Plt#_1
AGAGCCGGAAACAAAA_AAGGGGAGGG
28._RUQ_1731
AGAGCCGGAAACAAAA_AAGGGGAGGG
29._GC-01-34-2-11
AGGGCCGGAAACAGAA_AAAGGGAGAG
30._GC-01-34-2-11
AAAACGAAAGACAGAA_AAGGAAGGAG
31._GC-01-34-2-11
AAAACGAAAGACAGAA_AAGGAAGGAG
 1516171819202122232425262728
_Input profile
AACCCTCCGGGGAATTACCGTTCTACAG
1._PA_150_[PER]
AACCCTCCGGGGAATTACCGTTCTACAG
2._PA_150_[PER]
AACCCTCCGGGGAATTACCGTTCTACAG
3._PA_150_[PER]
AACCCTCCGGGGAATTACCGTTCTACAG
4._RUQ_1731
____GGGGAA_ACCG__AA_
5._GC-01-034-2-11
AACCCTCCGGGGAGTTCCCGGTCCACAA
6._GC-01-034-2-11
AACCCTCCGGGGAGTTCCCGGTCCACAA
7._PA_150_[PER]
AACCCTCCGGGGAGTTCCCGGTCCACAA
8._PA_150_[PER]
AACCCTCCGGGGAGTTCCCGGTCCACAA
9._PA_150_[PER]
AACCCTCCGGGGAGTTCCCGGTCCACAA
10._PA_150_[PER]
AACCCTCCGGGGAGTTCCCGGTCCACAA
11._GC-01-034-2-11
AACCCTCCGGGGAGTTCCCGGTCCACAA
12._GC-01-034-2-11
AACCCTCCGGGGAGTTCCCGGTCCACAA
13._PA_150_[PER]
ATCCCTCTCGGGAGTTACCCGTCTACAG
14._GC-01-034-2-11
ATCCCTCTCGGGAGTTACCCGTCTACAG
15._PA_150_[PER]
AAGGTTCTGGGTGGTTAAGGTTCTACAA
16._GC-01-034-2-11
AAGGTTCTGGGTGGTTAAGGTTCTACAA
17._PA_150_[PER]
AAGGTTCTGGGTGGTTAAGGTTCTACAA
18._PA_150_[PER]
AAGGTTCTGGGTGGTTAAGGTTCTACAA
19._PA_150_[PER]
AAGGTTCTGGGTGGTTAAGGTTCTACAA
20._PA_150_[PER]
AAGGTTCTGGGTGGTTAAGGTTCTACAA
21._GC-01-034-2-11
AAGGTTCTGGGTGGTTAAGGTTCTACAA
22._GC-01-034-2-11
AAGGTTCTGGGTGGTTAAGGTTCTACAA
23._GC-01-034-2-11
AAGGTTCTGGGTGGTTAAGGTTCTACAA
24._GC-01-034-2-11
AAGGTTCTGGGTGGTTAAGGTTCTACAA
25._PA_150_[PER]
AAGGCTCTCCGGAACTAAGGGTCTCCAA
26._PA_150_[PER]
AACGCCCCCCGGGGCTACGGGGCCACAG
27._PA_150_[PER]_Fld#_173_Plt#_1
AACCAGGGCCCC_AAACCGAA_AC_
28._RUQ_1731
AACCAGGGCCCC_AAACCGAA_AC_
29._GC-01-34-2-11
AACCAGGGCCCC_AACCCGAC_AC_
30._GC-01-34-2-11
AAGGAAAGCCAC_AAAAGGAA_AC_
31._GC-01-34-2-11
AAGGAAAGCCAC_AAAAGGAA_AC_
 29303132333435363738    
_Input profile
GGAACCGGAACCGGACAAGGX_XX_XX_XX_X
1._PA_150_[PER]
GGAACCGGAACCGGACAAGGX_XX_XX_XX_X
2._PA_150_[PER]
GGAACCGGAACCGGACAAGGX_XX_XX_XX_X
3._PA_150_[PER]
GGAACCGGAACCGGACAAGGX_XX_XX_XX_X
4._RUQ_1731
___GG___AC__X_XX_XX_XX_X
5._GC-01-034-2-11
GGAACCAGAACCGGCCATGGX_XX_XX_XX_X
6._GC-01-034-2-11
GGAACCAGAACCGGCCATGGX_XX_XX_XX_X
7._PA_150_[PER]
GGAACCAGAACCGGCCATGGX_XX_XX_XX_X
8._PA_150_[PER]
GGAACCAGAACCGGCCATGGX_XX_XX_XX_X
9._PA_150_[PER]
GGAACCAGAACCGGCCATGGX_XX_XX_XX_X
10._PA_150_[PER]
GGAACCAGAACCGGCCATGGX_XX_XX_XX_X
11._GC-01-034-2-11
GGAACCAGAACCGGCCATGGX_XX_XX_XX_X
12._GC-01-034-2-11
GGAACCAGAACCGGCCATGGX_XX_XX_XX_X
13._PA_150_[PER]
GGAACCAAACCTGTAAATCGX_XX_XX_XX_X
14._GC-01-034-2-11
GGAACCAAACCTGTAAATCGX_XX_XX_XX_X
15._PA_150_[PER]
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
16._GC-01-034-2-11
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
17._PA_150_[PER]
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
18._PA_150_[PER]
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
19._PA_150_[PER]
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
20._PA_150_[PER]
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
21._GC-01-034-2-11
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
22._GC-01-034-2-11
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
23._GC-01-034-2-11
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
24._GC-01-034-2-11
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
25._PA_150_[PER]
GGAACTAAAACTGGACTTGGX_XX_XX_XX_X
26._PA_150_[PER]
GGAACCAAACTTGGCCTTCCX_XX_XX_XX_X
27._PA_150_[PER]_Fld#_173_Plt#_1
GGAAGGGGAA_CCACAAGGX_XX_XX_XX_X
28._RUQ_1731
GGAAGGGGAAGGCCACAAGGX_XX_XX_XX_X
29._GC-01-34-2-11
GGAAGGAGACGGCCCCATGGX_XX_XX_XX_X
30._GC-01-34-2-11
GGAAGGAGACAAACACATGGX_XX_XX_XX_X
31._GC-01-34-2-11
GGAAGGAGACAAACACATGGX_XX_XX_XX_X

Input profile: PA_150_[PER]

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

1._PA_150_[PER]

identical
38 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

2._PA_150_[PER]

identical
38 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

3._PA_150_[PER]

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

4._PA_150_[PER] RUQ_1731

95.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

5._PA_150_[PER] GC-01-034-2-11

84.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._PA_150_[PER] GC-01-034-2-11

84.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._PA_150_[PER]

84.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

8._PA_150_[PER]

84.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

9._PA_150_[PER]

84.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

10._PA_150_[PER]

84.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

11._PA_150_[PER] GC-01-034-2-11

84.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

12._PA_150_[PER] GC-01-034-2-11

84.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

13._PA_150_[PER]

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 5 > FP
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

14._PA_150_[PER] GC-01-034-2-11

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

15._PA_150_[PER]

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

16._PA_150_[PER] GC-01-034-2-11

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

17._PA_150_[PER]

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 6
 Dapeng Zhang, 2016

18._PA_150_[PER]

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 14 > F
 Dapeng Zhang, 2016

19._PA_150_[PER]

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 16
 Dapeng Zhang, 2016

20._PA_150_[PER]

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 9 > FP
 Dapeng Zhang, 2016

21._PA_150_[PER] GC-01-034-2-11

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

22._PA_150_[PER] GC-01-034-2-11

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

23._PA_150_[PER] GC-01-034-2-11

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

24._PA_150_[PER] GC-01-034-2-11

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

25._PA_150_[PER]

65.8 %
38 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

26._PA_150_[PER]

58.6 %
35 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria PA 150
 Dapeng Zhang, 2016

27._PA_150_[PER] PA_150_[PER]_Fld#_173_Plt#_1

51.5 %
33 shared markers

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USDA-TARS, United States of America
Location: Field: 173, Tree: 1
 Mars, 2018

28._PA_150_[PER] RUQ_1731

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

29._PA_150_[PER] GC-01-34-2-11

39.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 7 > FP4
Notes: Brazil_Selections_Poss_grandparent/ (offtype, similar to offtype EET 272, parcel 3311)
 Mars, 2018

30._PA_150_[PER] GC-01-34-2-11

38.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 5 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

31._PA_150_[PER] GC-01-34-2-11

38.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 14 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25